species:   Clros
pid:       PID1838
parent:    cro-mir-4
paralog:   
locus:     CADEHS020000005.2:590451-590536
matures:   ['UCAGCCUCGAGACUUUGCC', 'CAAAGUCUCGAGGCUAAG']
srr:       ERR5960091
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960091.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960091.cram CADEHS020000005.2:590451-590536

167 out of bounds
4104 alignments
554 proper strand
492 stranded perfect matches

*******************                                              ******************** 
UCAGCCUCGAGACUUUGCCGGAUAGCUUUGUUUUCUUUACGGCGAAAAAGAAAAAGAAUAUAUCCUGCAAAGUCUCGAGGCUAAGC
..((((((((((((((((.(((((..(((.((((((((........)))))))).)))..))))).))))))))))))))))....
UCAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=19 a=389 c
-------------------------------------------------------------------CAAAGUCUCGAGGCUAAG- l=18 a=0 c*
UCAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=19 a=389 ma
-------------------------------------------------------------------CAAAGUCUCGAGGCUAAG- l=18 a=0 ma*

---------------------------------------------------------------------AAGUCUCGAGGC----- l=12 a=1 
-----------------------------------------------------------------UGCAAAGUCUCGAGGCUAA-- l=19 a=1 
-----------------------------------------------------------------UGCAAAGUCUCGAGGCUAAGC l=21 a=1 
--------------------------------------------------------------UCCUGCAAAGUCUCGAGGC----- l=19 a=1 
--------------------------------------------------------------UCCUGCAAAGUCUCGAGGCU---- l=20 a=1 
----------------------------------------------------------UAUAUCCUGCAAAGUCUCG--------- l=19 a=1 
----------------------------------------------------------UAUAUCCUGCAAAGUCUCGAG------- l=21 a=1 
-----CUCGAGACUUUGCCGGAUAGCUa---------------------------------------------------------- l=23 a=1 
-----CUCGAGACUUUGCCGGAUAGCUUUGUUUUCUUUACGGCGAAAAAGAAAAAG------------------------------ l=51 a=3 
-CAGCCUCGAGACUUUGC-------------------------------------------------------------------- l=17 a=1 
-CAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=18 a=20 
-uAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=18 a=1 
-CAGCCcCGAGACUUUGCC------------------------------------------------------------------- l=18 a=1 
-CAGCCUCGAGACUUUGCCG------------------------------------------------------------------ l=19 a=1 
-CAGCCUCGAGACUUUGCCGa----------------------------------------------------------------- l=20 a=1 
UCAGCCUCGAGACUUUGC-------------------------------------------------------------------- l=18 a=65 
UaAGCCUCGAGACUUUGC-------------------------------------------------------------------- l=18 a=1 
UCAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=19 a=389 (c,ma)
UuAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=19 a=54 
UCAGCCUCGAGACgUUGCC------------------------------------------------------------------- l=19 a=2 
UCAGCCUCGAGACUUUGCCG------------------------------------------------------------------ l=20 a=5 
UCAGCCUCGAGACUUUGCaG------------------------------------------------------------------ l=20 a=1 
UCAGCCUCGAGACUUUGCCGGA---------------------------------------------------------------- l=22 a=1 

mb-01011
ax-1011001
ku-11
ss-101011011100
fn-101
